trilinos/stratimikos/simple_stratimikos_example_8cpp-example.html

// @HEADER

// *****************************************************************************

//         Stratimikos: Thyra-based strategies for linear solvers

//

// Copyright 2006 NTESS and the Stratimikos contributors.

// SPDX-License-Identifier: BSD-3-Clause

// *****************************************************************************

// @HEADER


#include "Stratimikos_DefaultLinearSolverBuilder.hpp"

#include "EpetraExt_readEpetraLinearSystem.h"

#include "Teuchos_GlobalMPISession.hpp"

#include "Teuchos_VerboseObject.hpp"

#include "Teuchos_XMLParameterListHelpers.hpp"

#include "Teuchos_CommandLineProcessor.hpp"

#include "Teuchos_StandardCatchMacros.hpp"

#ifdef HAVE_MPI

#  include "Epetra_MpiComm.h"

#else

#  include "Epetra_SerialComm.h"

#endif


namespace {


// Helper function to compute a single norm for a vector

double epetraNorm2( const Epetra_Vector &v )

{

  double norm[1] = { -1.0 };

  v.Norm2(&norm[0]);

  return norm[0];

}


} // namespace


int main(int argc, char* argv[])

{


  using Teuchos::rcp;

  using Teuchos::RCP;

  using Teuchos::CommandLineProcessor;

  typedef Teuchos::ParameterList::PrintOptions PLPrintOptions;


  bool success = true;

  bool verbose = true;


  Teuchos::GlobalMPISession mpiSession(&argc, &argv);


  Teuchos::RCP<Teuchos::FancyOStream>

    out = Teuchos::VerboseObjectBase::getDefaultOStream();


  try {


    //

    // A) Program setup code

    //


    //

    // Read options from command-line

    //


    std::string     matrixFile             = "";

    std::string     extraParamsFile        = "";

    double          tol                    = 1e-5;

    bool            onlyPrintOptions       = false;

    bool            printXmlFormat         = false;

    bool            showDoc                = true;


    Stratimikos::DefaultLinearSolverBuilder linearSolverBuilder;


    CommandLineProcessor  clp(false); // Don't throw exceptions


    // Set up command-line options for the linear solver that will be used!

    linearSolverBuilder.setupCLP(&clp);


    clp.setOption( "matrix-file", &matrixFile

                   ,"Defines the matrix and perhaps the RHS and LHS for a linear system to be solved." );

    clp.setOption( "tol", &tol, "Tolerance to check against the scaled residual norm." );

    clp.setOption( "extra-params-file", &extraParamsFile, "File containing extra parameters in XML format.");

    clp.setOption( "only-print-options", "continue-after-printing-options", &onlyPrintOptions

                   ,"Only print options and stop or continue on" );

    clp.setOption( "print-xml-format", "print-readable-format", &printXmlFormat

                   ,"Print the valid options in XML format or in readable format." );

    clp.setOption( "show-doc", "hide-doc", &showDoc

                   ,"Print the valid options with or without documentation." );


    clp.setDocString(

      "Simple example for the use of the Stratimikos facade Stratimikos::DefaultLinearSolverBuilder.\n"

      "\n"

      "To print out just the valid options use --matrix-file=\"\" --only-print-options with --print-xml-format"

      " or --print-readable-format.\n"

      "\n"

      "To solve a linear system read from a file use --matrix-file=\"SomeFile.mtx\""

      " with options read from an XML file using --linear-solver-params-file=\"SomeFile.xml\"\n"

      );


    CommandLineProcessor::EParseCommandLineReturn parse_return = clp.parse(argc,argv);

    if( parse_return != CommandLineProcessor::PARSE_SUCCESSFUL ) return parse_return;


    //

    // Print out the valid options and stop if asked

    //


    if(onlyPrintOptions) {

      if(printXmlFormat)

        Teuchos::writeParameterListToXmlOStream(

          *linearSolverBuilder.getValidParameters()

          ,*out

          );

      else

        linearSolverBuilder.getValidParameters()->print(

          *out,PLPrintOptions().indent(2).showTypes(true).showDoc(showDoc)

          );

      return 0;

    }


    //

    // B) Epetra-specific code that sets up the linear system to be solved

    //

    // While the below code reads in the Epetra objects from a file, you can

    // setup the Epetra objects any way you would like.  Note that this next

    // set of code as nothing to do with Thyra at all, and it should not.

    //


    *out << "\nReading linear system in Epetra format from the file \'"<<matrixFile<<"\' ...\n";


#ifdef HAVE_MPI

    Epetra_MpiComm comm(MPI_COMM_WORLD);

#else

    Epetra_SerialComm comm;

#endif

    RCP<Epetra_CrsMatrix> epetra_A;

    RCP<Epetra_Vector> epetra_x, epetra_b;

    EpetraExt::readEpetraLinearSystem( matrixFile, comm, &epetra_A, NULL, &epetra_x, &epetra_b );


    if(!epetra_b.get()) {

      *out << "\nThe RHS b was not read in so generate a new random vector ...\n";

      epetra_b = rcp(new Epetra_Vector(epetra_A->OperatorRangeMap()));

      epetra_b->Random();

    }


    if(!epetra_x.get()) {

      *out << "\nThe LHS x was not read in so generate a new zero vector ...\n";

      epetra_x = rcp(new Epetra_Vector(epetra_A->OperatorDomainMap()));

      epetra_x->PutScalar(0.0); // Initial guess is critical!

    }


    *out << "\nPrinting statistics of the Epetra linear system ...\n";


    *out

      << "\n  Epetra_CrsMatrix epetra_A of dimension "

      << epetra_A->OperatorRangeMap().NumGlobalElements()

      << " x " << epetra_A->OperatorDomainMap().NumGlobalElements()

      << "\n  ||epetraA||inf = " << epetra_A->NormInf()

      << "\n  ||epetra_b||2 = " << epetraNorm2(*epetra_b)

      << "\n  ||epetra_x||2 = " << epetraNorm2(*epetra_x)

      << "\n";


    //

    // C) The "Glue" code that takes Epetra objects and wraps them as Thyra

    // objects

    //

    // This next set of code wraps the Epetra objects that define the linear

    // system to be solved as Thyra objects so that they can be passed to the

    // linear solver.

    //


    RCP<const Thyra::LinearOpBase<double> > A = Thyra::epetraLinearOp( epetra_A );

    RCP<Thyra::VectorBase<double> > x = Thyra::create_Vector( epetra_x, A->domain() );

    RCP<const Thyra::VectorBase<double> > b = Thyra::create_Vector( epetra_b, A->range() );


    // Note that above Thyra is only interacted with in the most trival of

    // ways.  For most users, Thyra will only be seen as a thin wrapper that

    // they need know little about in order to wrap their objects in order to

    // pass them to Thyra-enabled solvers.


    //

    // D) Thyra-specific code for solving the linear system

    //

    // Note that this code has no mention of any concrete implementation and

    // therefore can be used in any use case.

    //


    // Reading in the solver parameters from the parameters file and/or from

    // the command line.  This was setup by the command-line options

    // set by the setupCLP(...) function above.

    linearSolverBuilder.readParameters(out.get());


    // Augment parameters if appropriate

    if(extraParamsFile.length()) {

      Teuchos::updateParametersFromXmlFile( "./"+extraParamsFile,

        linearSolverBuilder.getNonconstParameterList().ptr() );

    }


    // Create a linear solver factory given information read from the

    // parameter list.

    RCP<Thyra::LinearOpWithSolveFactoryBase<double> > lowsFactory =

      linearSolverBuilder.createLinearSolveStrategy("");


    // Setup output stream and the verbosity level

    lowsFactory->setOStream(out);

    lowsFactory->setVerbLevel(Teuchos::VERB_LOW);


    // Create a linear solver based on the forward operator A

    RCP<Thyra::LinearOpWithSolveBase<double> > lows =

      Thyra::linearOpWithSolve(*lowsFactory, A);


    // Solve the linear system (note: the initial guess in 'x' is critical)

    Thyra::SolveStatus<double> status =

      Thyra::solve<double>(*lows, Thyra::NOTRANS, *b, x.ptr());

    *out << "\nSolve status:\n" << status;


    // Write the linear solver parameters after they were read

    linearSolverBuilder.writeParamsFile(*lowsFactory);


    //

    // E) Post process the solution and check the error

    //

    // Note that the below code is based only on the Epetra objects themselves

    // and does not in any way depend or interact with any Thyra-based

    // objects.  The point is that most users of Thyra can largely gloss over

    // the fact that Thyra is really being used for anything.

    //


    // Wipe out the Thyra wrapper for x to guarantee that the solution will be

    // written back to epetra_x!  At the time of this writting this is not

    // really needed but the behavior may change at some point so this is a

    // good idea.

    x = Teuchos::null;


    *out

      << "\nSolution ||epetra_x||2 = " << epetraNorm2(*epetra_x) << "\n";


    *out << "\nTesting the solution error ||b-A*x||/||b|| computed through the Epetra objects ...\n";


    // r = b - A*x

    Epetra_Vector epetra_r(*epetra_b);

    {

      Epetra_Vector epetra_A_x(epetra_A->OperatorRangeMap());

      epetra_A->Apply(*epetra_x,epetra_A_x);

      epetra_r.Update(-1.0,epetra_A_x,1.0);

    }


    const double

      nrm_r = epetraNorm2(epetra_r),

      nrm_b = epetraNorm2(*epetra_b),

      rel_err = ( nrm_r / nrm_b );

    const bool

      passed = (rel_err <= tol);


    *out

      << "||b-A*x||/||b|| = " << nrm_r << "/" << nrm_b << " = " << rel_err

      << " < tol = " << tol << " ? " << ( passed ? "passed" : "failed" ) << "\n";


    if(!passed) success = false;


  }

  TEUCHOS_STANDARD_CATCH_STATEMENTS(verbose, std::cerr, success)


  if (verbose) {

    if(success)  *out << "\nCongratulations! All of the tests checked out!\n";

    else         *out << "\nOh no! At least one of the tests failed!\n";

  }


  return ( success ? EXIT_SUCCESS : EXIT_FAILURE );


}

EpetraExt_readEpetraLinearSystem.h

Epetra_MpiComm

Epetra_MultiVector::Norm2
int Norm2(double *Result) const

Epetra_SerialComm

Epetra_Vector

Stratimikos::LinearSolverBuilder::getValidParameters
RCP< const ParameterList > getValidParameters() const
Definition Stratimikos_LinearSolverBuilder_def.hpp:300

Stratimikos::LinearSolverBuilder::createLinearSolveStrategy
RCP< Thyra::LinearOpWithSolveFactoryBase< Scalar > > createLinearSolveStrategy(const std::string &linearSolveStrategyName) const
Definition Stratimikos_LinearSolverBuilder_def.hpp:388

Stratimikos::LinearSolverBuilder::setupCLP
void setupCLP(Teuchos::CommandLineProcessor *clp)
Setup the command-line processor to read in the needed data to extra the parameters from.
Definition Stratimikos_LinearSolverBuilder_def.hpp:171

Stratimikos::LinearSolverBuilder::getNonconstParameterList
RCP< ParameterList > getNonconstParameterList()
Definition Stratimikos_LinearSolverBuilder_def.hpp:274

Stratimikos::LinearSolverBuilder::readParameters
void readParameters(std::ostream *out)
Force the parameters to be read from a file and/or an extra XML string.
Definition Stratimikos_LinearSolverBuilder_def.hpp:192

Stratimikos::LinearSolverBuilder::writeParamsFile
void writeParamsFile(const Thyra::LinearOpWithSolveFactoryBase< Scalar > &lowsFactory, const std::string &outputXmlFileName="") const
Write the parameters list for a LinearOpWithSolveFactoryBase object to a file after the parameters ar...
Definition Stratimikos_LinearSolverBuilder_def.hpp:222

EpetraExt::readEpetraLinearSystem
void readEpetraLinearSystem(const std::string &fileName, const Epetra_Comm &comm, Teuchos::RCP< Epetra_CrsMatrix > *A=NULL, Teuchos::RCP< Epetra_Map > *map=NULL, Teuchos::RCP< Epetra_Vector > *x=NULL, Teuchos::RCP< Epetra_Vector > *b=NULL, Teuchos::RCP< Epetra_Vector > *xExact=NULL)