# ===========================================================================
#
#                            PUBLIC DOMAIN NOTICE
#               National Center for Biotechnology Information
#
#  This software/database is a "United States Government Work" under the
#  terms of the United States Copyright Act.  It was written as part of
#  the author's official duties as a United States Government employee and
#  thus cannot be copyrighted.  This software/database is freely available
#  to the public for use. The National Library of Medicine and the U.S.
#  Government have not placed any restriction on its use or reproduction.
#
#  Although all reasonable efforts have been taken to ensure the accuracy
#  and reliability of the software and data, the NLM and the U.S.
#  Government do not and cannot warrant the performance or results that
#  may be obtained by using this software or data. The NLM and the U.S.
#  Government disclaim all warranties, express or implied, including
#  warranties of performance, merchantability or fitness for any particular
#  purpose.
#
#  Please cite the author in any work or product based on this material.
#
# ===========================================================================


default: std

TOP ?= $(abspath ../..)
MODULE = tools/sra-dump

include $(TOP)/build/Makefile.env

INT_TOOLS =

EXT_TOOLS = \
	sra-dump \
	fastq-dump \
	sff-dump \
	illumina-dump \
	abi-dump

ALL_TOOLS = \
	$(INT_TOOLS) \
	$(EXT_TOOLS)

#-------------------------------------------------------------------------------
# outer targets
#
all std: vers-includes
	@ $(MAKE_CMD) $(TARGDIR)/std

$(ALL_TOOLS): vers-includes
	@ $(MAKE_CMD) $(BINDIR)/$@

.PHONY: all std $(ALL_TOOLS)

#-------------------------------------------------------------------------------
# std
#
$(TARGDIR)/std: \
	$(addprefix $(BINDIR)/,$(ALL_TOOLS))

.PHONY: $(TARGDIR)/std

#-------------------------------------------------------------------------------
# vers-includes
#
$(TARGDIR)/vers-includes: $(addsuffix .vers.h,$(EXT_TOOLS))

.PHONY: $(TARGDIR)/vers-includes

#-------------------------------------------------------------------------------
# clean
#
clean: stdclean

.PHONY: clean

#-------------------------------------------------------------------------------
# tag
#
tag: \
	$(addsuffix _tag,$(ALL_TOOLS))

.PHONY: tag $(addsuffix _tag,$(ALL_TOOLS))

#-------------------------------------------------------------------------------
# sra-dump
#  vdb table copy tool
#
SRADUMP_SRC = \
	sra-dump

SRADUMP_OBJ = \
	$(addsuffix .$(OBJX),$(SRADUMP_SRC))

SRADUMP_LIB = \
	-lkapp \
	-lsradb \
	-lalign-reader \
	$(READONLY_SCHEMA_LIBS) \
	-lvdb \
	-lkdb \
	-lvfs \
	-lkrypto \
	-lkfg \
	-lkfs \
	-dksrch \
	-lkproc \
	-lklib \
	-lm

$(BINDIR)/sra-dump: $(SRADUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(SRADUMP_LIB)

sradump_tag:
	@ $(TOP)/build/tag-module.sh $(MODULE) sradump $(SRADUMP_OBJ)

#-------------------------------------------------------------------------------
# Common dumper definitions
#
DUMP_COMMON_SRC = \
	factory \
	fasta_dump \
	core

DUMP_COMMON_LIB = \
	-lsradb \
	-lsrareader \
	-dsraxf \
	-lalign-reader \
	-daxf \
	-lkapp \
	-dvxf \
	-lvdb \
	-lkdb \
	-lvfs \
	-lkrypto \
	-lkfg \
	-lkfs \
	-dksrch \
	-lkproc \
	-lklib \
	-lm

#-------------------------------------------------------------------------------
# fastq-dump
#
FASTQ_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	fastq

FASTQ_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(FASTQ_DUMP_SRC))

$(BINDIR)/fastq-dump: $(FASTQ_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

fastq-dump_tag:
	@ $(TOP)/build/tag-module.sh $(MODULE) fastq-dump $(FASTQ_DUMP_OBJ)

#-------------------------------------------------------------------------------
# sff-dump
#
SFF_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	sff

SFF_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(SFF_DUMP_SRC))

$(BINDIR)/sff-dump: $(SFF_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

sff-dump_tag:
	@ $(TOP)/build/tag-module.sh $(MODULE) sff-dump $(SFF_DUMP_OBJ)

#-------------------------------------------------------------------------------
# illumina-dump
#
ILLUMINA_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	illumina

ILLUMINA_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(ILLUMINA_DUMP_SRC))

$(BINDIR)/illumina-dump: $(ILLUMINA_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

illumina-dump_tag:
	@ $(TOP)/build/tag-module.sh $(MODULE) illumina-dump $(ILLUMINA_DUMP_OBJ)

#-------------------------------------------------------------------------------
# abi-dump
#
ABI_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	abi

ABI_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(ABI_DUMP_SRC))

$(BINDIR)/abi-dump: $(ABI_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

abi-dump_tag:
	@ $(TOP)/build/tag-module.sh $(MODULE) abi-dump $(ABI_DUMP_OBJ)
