mafft sample > x
diff x sample.fftns2 || exit

mafft --maxiterate 100  sample > x
diff x sample.fftnsi || exit

mafft --dpparttree sample > x
diff x sample.dpparttree || exit

mafft --globalpair sample > x
diff x sample.gins1 || exit

mafft --globalpair --maxiterate 100 sample > x
diff x sample.ginsi || exit

mafft --allowshift --globalpair --maxiterate 100 sample > x
diff x sample.ginsi.allowshift || exit

mafft --localpair sample > x
diff x sample.lins1 || exit

mafft --localpair --maxiterate 100 sample > x
diff x sample.linsi || exit

mafft --parttree sample > x
diff x sample.parttree || exit

mafft-qinsi samplerna > x
diff x samplerna.qinsi || exit

mafft-xinsi samplerna > x
diff x samplerna.xinsi || exit

rm x
